InterPro Database Data Mining • Data mining is the exploration and analysis, by automatic or semiautomatic means, of large quantities of data in order to discover meaningful patterns and rules • Common data mining tasks ... Microsoft PowerPoint - lec03s08.ppt Author: i "ProDom is a comprehensive set of protein domain families automatically generated from the UniProt Knowledge Database".
This comprehensiveness makes ProDom a unique resource usefully complementing expert derived databases, such as PROSITE ( 4 ), PFAM ( 5 ) or SMART ( 6 ), thereby helping to sustain the rapid growth of InterPro …
InterPro (1) is an integrative database which was founded 10 years ago when the PROSITE (2), PRINTS (3), Pfam (4) and ProDom (5) databases formed a consortium to amalgamate the predictive signatures they individually produced into a single resource. Organelle . Winner of the Standing Ovation Award for “Best PowerPoint Templates” from Presentations Magazine.
Welcome to the NDB The NDB contains information about experimentally-determined nucleic acids and complex assemblies. The InterPro BioMart allows users to retrieve InterPro data from a query-optimized data warehouse that is synchronized with the main InterPro database, and to build simple or complex queries and control the query results through a unified interface. The InterPro release 54.0 on October 15, 2015 includes 28,462 entries containing signatures of 19,110 families, 8,191 domains, 284 repeats, 115 active sites, 74 … Pratt-Discover patterns in unaligned proetin sequences. InterPro provides functional analysis of proteins by classifying them into families and predicting domains and important sites. GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents 34564 InterPro - A database of protein families, domains and functional sites
Experimental results are submitted directly into the database by researchers, and the data are essentially archival in nature.
Radar-Protein repeat detection. Plant . We combine protein signatures from a number of member databases into a single searchable resource, capitalising on their individual strengths to produce a powerful integrated database and diagnostic tool. 12 22.01.2014 13.
Work on SCOP (version 1) concluded in June 2009 with the release of SCOP 1.75.
GenBank ® is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences (Nucleic Acids Research, 2013 Jan;41(D1):D36-42).GenBank is part of the International Nucleotide Sequence Database Collaboration, which comprises the DNA DataBank of Japan (DDBJ), the European Nucleotide Archive (ENA), and GenBank at NCBI. …
Other. Phobius-predict transmembrane topology and signal peptides. InterPro provides functional analysis of proteins by classifying them into families and predicting domains and important sites.
InterProScan-Search protein sequences against InterPro databases. Primary databases are populated with experimentally derived data such as nucleotide sequence, protein sequence or macromolecular structure. Use the NDB to perform searches based on annotations relating to sequence, structure and function, and to download, analyze, and learn about nucleic acids. Immunological SCOPe (Structural Classification of Proteins — extended) is a database developed at the Berkeley Lab and UC Berkeley to extend the development and maintenance of SCOP. The ProDom protein domain family database originates from the early recognition that automated methods are needed to reach comprehensiveness of protein domain analysis ( 1 – 3). World's Best PowerPoint Templates - CrystalGraphics offers more PowerPoint templates than anyone else in the world, with over 4 million to choose from. 1575: InterPro "InterPro provides functional analysis of proteins by classifying them into families and predicting domains and important sites". We combine protein signatures from a number of member databases into a single searchable resource, capitalising on their individual strengths to produce a powerful integrated database and diagnostic tool.
As a result, when two proteins share a significant sequence similarity, it is extremely likely they will also share similar 3D structure. We now compute links between the ProDom families and the Gene Ontology database Gene Expression. They'll give your presentations a professional, memorable appearance - the kind of sophisticated look that today's audiences expect. Protein structure is nearly always more conserved than sequence. SCOP was conceived at the MRC Laboratory of Molecular Biology, and developed in collaboration with researchers in Berkeley.